South Africa completed an unbeaten tour of Europe with a 16-15 victory over England at Twickenham on Saturday that did more damage to the hosts’ hopes of a top-four seeding at next month’s World Cup draw.

Springboks flanker Willem Alberts’s try – the only one of the match – early in the second half proved the decisive score.

But with the home side trailing 16-12 and only two minutes left, England captain Chris Robshaw – criticised for running kickable penalties during last week’s defeat by Australia – told replacement five-eighth Owen Farrell to go for goal rather than opt for an attacking line-out that could have lead to a try.

But while Farrell landed the kick, it meant England, fifth in the world rankings, were still a point behind.

South Africa then ran down the clock to extend their unbeaten streak against England to 11 Tests.

England, who suffered a frustrating 14-14 draw with the Springboks in Port Elizabeth in June, made six changes from the side beaten 20-14 by Australia.

In contrast, South Africa were unchanged from the team that last week beat Scotland 21-10 at Murrayfield, having started their tour with a 16-12 win over Ireland in Dublin.

An attritional first half finished with South Africa 9-6 in front after Springboks five-eighth Pat Lambie kicked three penalties from as many attempts while his England counterpart, Toby Flood, landed two from four.

At a rainswept Twickenham, England’s rejigged pack was more competitive in the scrum and loose than they had been against the Wallabies, although the Springboks had the edge in the line-out.

It was no surprise, given the first half, that South Africa kicked a close-range penalty to touch early in the second period and it was from the set-piece that they grabbed a try.

After a catch and drive, South Africa lost the ball but Ben Youngs’s attempted fly-hack clear rebounded off Pietersen.

Wood knocked on the loose ball and Alberts plunged over the line for a try confirmed by the television match official.

Lambie converted and South Africa were two scores ahead at 16-6.

England threatened when centre Manu Tuilagi counter-attacked from inside his own half and found Chris Ashton in support.

But Ashton’s pass to fellow wing Brown was a poor one and allowed the Springbok defence time to regroup.

Just after the hour, South Africa conceded a ruck penalty and Farrell, on as a replacement for Flood, landed the 30-metre goal-kick to cut the Springboks’ advantage to 16-9.

England pressed for the converted try that would have tied the scores but several knock-ons spoilt promising positions.

They clawed back some of the ground when, with eight minutes left, Farrell kicked a penalty but it was all to no avail.